Index _ | B | C | D | E | F | G | I | L | M | N | O | P | R | S | T | U _ __init__() (peppr.DockQ method) B bisy_rmsd() (in module peppr) BiSyRMSD (class in peppr) BondAngleViolations (class in peppr) BondLengthViolations (class in peppr) C ClashCount (class in peppr) combine() (peppr.Evaluator static method) ContactFraction (class in peppr) D DockQ (class in peppr) dockq() (in module peppr) DockQScore (class in peppr) E evaluate() (peppr.BiSyRMSD method) (peppr.BondAngleViolations method) (peppr.BondLengthViolations method) (peppr.ClashCount method) (peppr.ContactFraction method) (peppr.DockQScore method) (peppr.GlobalLDDTScore method) (peppr.InterfaceRMSD method) (peppr.IntraLigandLDDTScore method) (peppr.LDDTPLIScore method) (peppr.LDDTPPIScore method) (peppr.LigandRMSD method) (peppr.Metric method) (peppr.MonomerLDDTScore method) (peppr.MonomerRMSD method) (peppr.MonomerTMScore method) (peppr.PocketAlignedLigandRMSD method) EvaluationWarning Evaluator (class in peppr) Evaluator.MatchMethod (class in peppr) F feed() (peppr.Evaluator method) find_all_matches() (in module peppr) find_clashes() (in module peppr) find_optimal_match() (in module peppr) fnat() (in module peppr) G get_contact_residues() (in module peppr) get_results() (peppr.Evaluator method) GlobalLDDTScore (class in peppr) GraphMatchWarning I InterfaceRMSD (class in peppr) IntraLigandLDDTScore (class in peppr) irmsd() (in module peppr) is_small_molecule() (in module peppr) L LDDTPLIScore (class in peppr) LDDTPPIScore (class in peppr) LigandRMSD (class in peppr) lrmsd() (in module peppr) M MatchWarning MeanSelector (class in peppr) MedianSelector (class in peppr) Metric (class in peppr) MonomerLDDTScore (class in peppr) MonomerRMSD (class in peppr) MonomerTMScore (class in peppr) N NoContactError O OracleSelector (class in peppr) P pocket_aligned_lrmsd() (in module peppr) PocketAlignedLigandRMSD (class in peppr) Python Enhancement Proposals PEP 8 R RandomSelector (class in peppr) S sanitize() (in module peppr) select() (peppr.MeanSelector method) (peppr.MedianSelector method) (peppr.OracleSelector method) (peppr.RandomSelector method) (peppr.Selector method) (peppr.TopSelector method) Selector (class in peppr) smaller_is_better() (peppr.BiSyRMSD method) (peppr.BondAngleViolations method) (peppr.BondLengthViolations method) (peppr.ClashCount method) (peppr.ContactFraction method) (peppr.DockQScore method) (peppr.GlobalLDDTScore method) (peppr.InterfaceRMSD method) (peppr.IntraLigandLDDTScore method) (peppr.LDDTPLIScore method) (peppr.LDDTPPIScore method) (peppr.LigandRMSD method) (peppr.Metric method) (peppr.MonomerLDDTScore method) (peppr.MonomerRMSD method) (peppr.MonomerTMScore method) (peppr.PocketAlignedLigandRMSD method) standardize() (in module peppr) summarize_metrics() (peppr.Evaluator method) T tabulate_metrics() (peppr.Evaluator method) TopSelector (class in peppr) U UnmappableEntityError
