Index _ | B | C | D | E | F | G | I | L | M | N | O | P | R | S | T | U | V _ __init__() (peppr.ContactMeasurement method) (peppr.DockQ method) (peppr.RamaScore method) (peppr.RotamerScore method) B bisy_rmsd() (in module peppr) BiSyRMSD (class in peppr) BondAngleViolations (class in peppr) BondLengthViolations (class in peppr) C ChiralityViolations (class in peppr) ClashCount (class in peppr) combine() (peppr.Evaluator static method) ContactFraction (class in peppr) ContactMeasurement (class in peppr) D disable_atom_matching() (peppr.Metric method) DockQ (class in peppr) dockq() (in module peppr) DockQScore (class in peppr) E estimate_formal_charges() (in module peppr) evaluate() (peppr.BiSyRMSD method) (peppr.BondAngleViolations method) (peppr.BondLengthViolations method) (peppr.ChiralityViolations method) (peppr.ClashCount method) (peppr.ContactFraction method) (peppr.DockQScore method) (peppr.GlobalLDDTScore method) (peppr.InterfaceRMSD method) (peppr.IntraLigandLDDTScore method) (peppr.LDDTPLIScore method) (peppr.LDDTPPIScore method) (peppr.LigandRMSD method) (peppr.Metric method) (peppr.MonomerLDDTScore method) (peppr.MonomerRMSD method) (peppr.MonomerTMScore method) (peppr.PLIFRecovery method) (peppr.PocketAlignedLigandRMSD method) (peppr.PocketDistance method) (peppr.PocketVolumeOverlap method) (peppr.RamachandranViolations method) (peppr.RotamerViolations method) EvaluationWarning Evaluator (class in peppr) Evaluator.MatchMethod (class in peppr) F feed() (peppr.Evaluator method) filter_matched() (in module peppr) find_all_matches() (in module peppr) find_atoms_by_pattern() (in module peppr) find_clashes() (in module peppr) find_matching_centroids() (in module peppr) find_optimal_match() (in module peppr) fnat() (in module peppr) G get_contact_residues() (in module peppr) get_fraction_of_rama_outliers() (in module peppr) get_fraction_of_rotamer_outliers() (in module peppr) get_results() (peppr.Evaluator method) GlobalLDDTScore (class in peppr) GraphMatchWarning I InterfaceRMSD (class in peppr) IntraLigandLDDTScore (class in peppr) irmsd() (in module peppr) is_small_molecule() (in module peppr) L LDDTPLIScore (class in peppr) LDDTPPIScore (class in peppr) LigandRMSD (class in peppr) lrmsd() (in module peppr) M MatchWarning MeanSelector (class in peppr) MedianSelector (class in peppr) Metric (class in peppr) MonomerLDDTScore (class in peppr) MonomerRMSD (class in peppr) MonomerTMScore (class in peppr) N NoContactError O OracleSelector (class in peppr) P PLIFRecovery (class in peppr) PLIFRecovery.InteractionType (class in peppr) pocket_aligned_lrmsd() (in module peppr) PocketAlignedLigandRMSD (class in peppr) PocketDistance (class in peppr) PocketVolumeOverlap (class in peppr) Python Enhancement Proposals PEP 8 R RamachandranViolations (class in peppr) RamaScore (class in peppr) RandomSelector (class in peppr) RotamerScore (class in peppr) RotamerViolations (class in peppr) S sanitize() (in module peppr) select() (peppr.MeanSelector method) (peppr.MedianSelector method) (peppr.OracleSelector method) (peppr.RandomSelector method) (peppr.Selector method) (peppr.TopSelector method) Selector (class in peppr) smaller_is_better() (peppr.BiSyRMSD method) (peppr.BondAngleViolations method) (peppr.BondLengthViolations method) (peppr.ChiralityViolations method) (peppr.ClashCount method) (peppr.ContactFraction method) (peppr.DockQScore method) (peppr.GlobalLDDTScore method) (peppr.InterfaceRMSD method) (peppr.IntraLigandLDDTScore method) (peppr.LDDTPLIScore method) (peppr.LDDTPPIScore method) (peppr.LigandRMSD method) (peppr.Metric method) (peppr.MonomerLDDTScore method) (peppr.MonomerRMSD method) (peppr.MonomerTMScore method) (peppr.PLIFRecovery method) (peppr.PocketAlignedLigandRMSD method) (peppr.PocketDistance method) (peppr.PocketVolumeOverlap method) (peppr.RamachandranViolations method) (peppr.RotamerViolations method) standardize() (in module peppr) StructureMismatchError summarize_metrics() (peppr.Evaluator method) T tabulate_metrics() (peppr.Evaluator method) TopSelector (class in peppr) U UnmappableEntityError V volume() (in module peppr) volume_overlap() (in module peppr)
